Manually setting the "PrecompiledHeaderThrough" value using the options -Yu, -YX and -Yc doesn't work. The string is filled into " "PrecompiledHeaderFile" instead.

Solution:
msvc_objectmodel.cpp: lines 870, 874 and 882

change
PrecompiledHeaderFile = option+3;
to
PrecompiledHeaderThrough = option+3;