"Remove file..." action on qrc content does not update project tree if file isn't removed from git, too

When removing a file through the "Remove file..." context menu action for a qrc file in Projects pane the file still appears in the project tree.

How to reproduce

Create e.g. a new Qt Quick application, Qt Quick 2.2 component set.
Create a git repo for the project, add all files in an inital commit
Right-click on 'qml/main.qml' file, select "Remove file..."
Confirm dialog whether to remove file, leave 'Delete file permanently' unchecked
Click 'No' on "Version Control" dialog asking "Would you like to remove this file from the version control system (Git)?"

What I expect

The file is not deleted. However, it is removed from qrc, and also does not show up in Projects pane any more

What happens

The file is not deleted, and removed from qrc file. However, it still appears in the projects pane.