LNK4042 generated on Qt Creator due to .pro file having repeated filenames

Unfortunately due to the nature of this bug I did not find an isolated case to provide, but I can describe steps to reproduce:

I was working on the DockWindow example for QMainWIndow, and I decided I wanted to integrate DarkStyle from a repo, but manually had to copy and add files to the project.

https://github.com/Jorgen-VikingGod/Qt-Frameless-Window-DarkStyle

I added a few new files and folders from DarkStyle in something like this order:

The files DarkStyle.cpp and DarkStyle.h

The darkstyle/ folder (copied from inside an archive download)

The images/ folder

Then I copied framelesswindow/ folder and its contents to qt-mainapp/ but had not yet added it to the project or resources, however I did add darkstyle/ and images/ at this point.

I "Add Existing Items..." and added the DarkStyle.cpp and Darkstyle.h files

Then, I built and it threw LNK4042 on DarkStyle.h

Caught off guard, I added some #pragma once and the issue went away, it built.

Everything built and ran correctly, but the title bar was not changed because I only used the DarkStyle object.  I wanted to add the framelesswindow object.

I then added framelesswindow/ after further consideration, but for a reason the framelesswindow.ui was not included (its a form)

 I then added the  images/ folder and the darkstyle/ folder to the .qrc from Add Existing Items.. context menu. 

When I went to manually add

 FORMS += framelesswindow.ui 

to the .pro file for the project, I noticed the HEADERS and SOURCES lists were really, really long, but I added the FORMS line and proceeded to build.

I then built and it came back with something like 24 issues LNK4042

After examining the .pro file, I saw that all of my original files (before adding DarkStyle files at all) in the HEADERS and SOURCES section were duplicated somewhat randomly twice.

So if before it was:

HEADERS = a.h\
b.h\
c.h\
d.h

it now read:

HEADERS = a.h\
b.h\
c.h\
b.h\
c.h\
d.h\
b.h\
c.h\
d.h 

This was repeated for SOURCES as well.